spark读取MySQL大Table的效能问题

爱被打了一巴掌 2022-06-13 10:45 113阅读 0赞

在测试从Spark Shell读取MySQL一张Large Table时，发生了Out of memory和connection timeout问题，记录一下处理的过程：

MySQL Table资料笔数：1400万笔左右  
Spark Cluster配置：Master \* 1，Slave \* 3，皆为1 core 8G   
Spark版本：2.1.1

星火配置配置：  
spark-env.sh

SPARK_WORKER_MEMORY=6g
    SPARK_DRIVER_MEMORY=6g
    SPARK_EXECUTOR_MEMORY=2g

执行指令：

./bin/spark-shell --master spark://192.168.xx.xx:7077 --executor-memory 4g --packages mysql:mysql-connector-java:5.1.38
    
    val sqlContext = new org.apache.spark.sql.SQLContext(sc)
    
    val df = sqlContext.read.format("jdbc").option("url", "jdbc:mysql://192.168.x.x/test").option("driver", "com.mysql.jdbc.Driver").option("dbtable", "test_table").option("user", "root").option("password", "test").load()
    
    df.createOrReplaceTempView("test_table")
    
    import org.apache.spark.storage.StorageLevel
    df.persist(StorageLevel.MEMORY_AND_DISK)
    
    val sqlDf = sql("select * from test_table limit 10000")
    sqlDf.show()

一开始无论执行什么query，只要是query 这张大table都会出现OOM，重试几次甚至出现executor heartbeat timeout。

错误讯息：  
Error Message: Executor heartbeat timeout

[Stage 0:=======================================================> (39 + 1) / 40]17/06/06 10:26:09 WARN HeartbeatReceiver: Removing executor 2 with no recent heartbeats: 147897 ms exceeds timeout 120000 ms
    17/06/06 10:26:09 ERROR TaskSchedulerImpl: Lost executor 2 on 192.168.1.181: Executor heartbeat timed out after 147897 ms
    17/06/06 10:26:09 WARN TaskSetManager: Lost task 39.0 in stage 0.0 (TID 39, 192.168.1.181, executor 2): ExecutorLostFailure (executor 2 exited caused by one of the running tasks) Reason: Executor heartbeat timed out after 147897 ms...略

错误信息：OOM

[Stage 0:======================================================>  (27 + 1) / 28]17/06/06 10:14:25 WARN TaskSetManager: Lost task 27.0 in stage 0.0 (TID 27, 192.168.1.184, executor 0): java.lang.OutOfMemoryError: Java heap space
            at com.mysql.jdbc.MysqlIO.nextRowFast(MysqlIO.java:2157)
            at com.mysql.jdbc.MysqlIO.nextRow(MysqlIO.java:1964)
            at com.mysql.jdbc.MysqlIO.readSingleRowSet(MysqlIO.java:3316)
            at com.mysql.jdbc.MysqlIO.getResultSet(MysqlIO.java:463)
            at com.mysql.jdbc.MysqlIO.readResultsForQueryOrUpdate(MysqlIO.java:3040)
            at com.mysql.jdbc.MysqlIO.readAllResults(MysqlIO.java:2288)
            at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2681)
            at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2551)
            at ...略

查了官方文件和这篇[spark read mysql效能调校][spark read mysql]文章后，有几种作法来tuning:

(1)增加partition数  
会比较慢，但是至少可以把Table读进来，Spark会将资料切成小块partition，分散到不同的executor上。

（2）设定火花MySQL连接选项

*  主要是这几个设定：partitionColumn, lowerBound, upperBound, numPartitions, fetchsize   
    PS如果使用partitionColumn，则lowerBound,upperBound,numPartitions都需设定
 *  partitionColumn: 用来决定partition切割的栏位，必须是numeric型态资料，不一定要唯一。
 *  lowerBound \\ upperBound: 决定要fetch的值range
 *  会用这几个options来决定要query的dataset。  
    `SELECT * FROM table WHERE partitionColumn BETWEEN lowerBound AND upperBound`

(3) Spark记忆体管理：worker 本身会保留一部份的memory来做cache

*  spark 会将memory大致分成三种，user可使用的、资料shuffle用的，储存RDD的
 *  如果使用者程式要操作的物件很大，可以把快取RDD的大小和资料shuffle大小调低，以增加物件处理的效能

官方文件说明：

- spark.memory.fraction expresses the size of M as a fraction of the (JVM heap space - 300MB) (default 0.6). The rest of the space (40%) is reserved for user data structures, internal metadata in Spark, and safeguarding against OOM errors in the case of sparse and unusually large records.
    - spark.memory.storageFraction expresses the size of R as a fraction of M (default 0.5). R is the storage space within M where cached blocks immune to being evicted by execution.

--------------------

这边使用到的是第2和第3个方法

首先在query mysql的指令加上options  
`val df = sqlContext.read.format("jdbc").option("url", "jdbc:mysql://192.168.x.x/test").option("driver", "com.mysql.jdbc.Driver").option("dbtable", "test_table").option("user", "root").option("password", "test").option("numPartitions",30).option("partitionColumn","id").option("lowerBound", "0").option("upperBound","20000").load()`

并在spark-default.conf 加入下面设定

# for heartbeat timeout
    spark.network.timeout            10000000
    spark.executor.heartbeatInterval 10000000
    # for OOM
    spark.memory.fraction            0.75
    spark.storage.memoryFraction     0.45

再执行以下query，都可以顺利读入了

val sqlDf = sql("select count(*) from test_table where dt >= '2017-05-01'") sqlDf: org.apache.spark.sql.DataFrame = [count(1): bigint] scala> sqlDf.show() +--------+
    |count(1)| +--------+
    | 222166| +--------+
    
    val sqlDf = sql("select count(*) from test_table") sqlDf: org.apache.spark.sql.DataFrame = [count(1): bigint] scala> sqlDf.show() +--------+
    |count(1)| +--------+
    |14665557| +--------+

不确定这样是不是最佳解法，不过至少解决掉问题了@@   
如果不需要读整张Table，其实可以把dbtable的value改成SQL query

原本是这样，直接写Table名称，就会读整张Table   
`.option("dbtable", "test_table")`  
可以改写成：  
`.option("dbtable", "(select * from test_table where dt >= '2017-05-01') as T")`  
PS记得一定要用左右括号包起来，因为dbtable的value会被当成一张table作查询，mysql connector会自动dbtable后面加上where 1=1，如果没包起来就会出现SQL Syntax Error之类的错误

原文http://ithelp.ithome.com.tw/articles/10189787?sc=rss.qu

[spark read mysql]: https://www.percona.com/blog/2016/08/17/apache-spark-makes-slow-mysql-queries-10x-faster/