HDF5 library version mismatched error

╰+哭是因爲堅強的太久メ 2021-12-10 00:49 284阅读 0赞

\[ RUN      \] RMSPropSolverTest/1.TestLeastSquaresUpdateWithEverythingAccum  
Warning! \*\*\*HDF5 library version mismatched error\*\*\*  
The HDF5 header files used to compile this application do not match  
the version used by the HDF5 library to which this application is linked.  
Data corruption or segmentation faults may occur if the application continues.  
This can happen when an application was compiled by one version of HDF5 but  
linked with a different version of static or shared HDF5 library.  
You should recompile the application or check your shared library related  
settings such as 'LD\_LIBRARY\_PATH'.  
You can, at your own risk, disable this warning by setting the environment  
variable 'HDF5\_DISABLE\_VERSION\_CHECK' to a value of '1'.  
Setting it to 2 or higher will suppress the warning messages totally.  
Headers are 1.8.17, library is 1.10.4  
            SUMMARY OF THE HDF5 CONFIGURATION  
            =================================

General Information:  
\-------------------  
                   HDF5 Version: 1.10.4  
                  Configured on: Wed Dec 19 18:26:52 UTC 2018  
                  Configured by: root@3dad7c19-81ba-4672-4f33-547177f88490  
                    Host system: x86\_64-conda\_cos6-linux-gnu  
              Uname information: Linux 3dad7c19-81ba-4672-4f33-547177f88490 4.4.0-62-generic \#83-Ubuntu SMP Wed Jan 18 14:10:15 UTC 2017 x86\_64 x86\_64 x86\_64 GNU/Linux  
                       Byte sex: little-endian  
             Installation point: /home/lsz/anaconda2

Compiling Options:  
\------------------  
                     Build Mode: production  
              Debugging Symbols: no  
                        Asserts: no  
                      Profiling: no  
             Optimization Level: high

Linking Options:  
\----------------  
                      Libraries: static, shared  
  Statically Linked Executables:  
                        LDFLAGS: -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,-rpath,/home/lsz/anaconda2/lib -L/home/lsz/anaconda2/lib  
                     H5\_LDFLAGS:  
                     AM\_LDFLAGS:  -L/home/lsz/anaconda2/lib  
                Extra libraries: -lrt -lpthread -lz -ldl -lm  
                       Archiver: /tmp/build/80754af9/hdf5\_1545243905949/\_build\_env/bin/x86\_64-conda\_cos6-linux-gnu-ar  
                       AR\_FLAGS: cr  
                         Ranlib: /tmp/build/80754af9/hdf5\_1545243905949/\_build\_env/bin/x86\_64-conda\_cos6-linux-gnu-ranlib

Languages:  
\----------  
                              C: yes  
                     C Compiler: /tmp/build/80754af9/hdf5\_1545243905949/\_build\_env/bin/x86\_64-conda\_cos6-linux-gnu-cc  
                       CPPFLAGS: -DNDEBUG -D\_FORTIFY\_SOURCE=2 -O2  
                    H5\_CPPFLAGS: -D\_GNU\_SOURCE -D\_POSIX\_C\_SOURCE=200112L   -DNDEBUG -UH5\_DEBUG\_API  
                    AM\_CPPFLAGS:  -I/home/lsz/anaconda2/include  
                        C Flags: -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -pipe -I/home/lsz/anaconda2/include -fdebug-prefix-map=$\{SRC\_DIR\}=/usr/local/src/conda/$\{PKG\_NAME\}-$\{PKG\_VERSION\} -fdebug-prefix-map=$\{PREFIX\}=/usr/local/src/conda-prefix  
                     H5 C Flags:  -std=c99  -pedantic -Wall -Wextra -Wbad-function-cast -Wc++-compat -Wcast-align -Wcast-qual -Wconversion -Wdeclaration-after-statement -Wdisabled-optimization -Wfloat-equal -Wformat=2 -Winit-self -Winvalid-pch -Wmissing-declarations -Wmissing-include-dirs -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wpacked -Wpointer-arith -Wredundant-decls -Wshadow -Wstrict-prototypes -Wswitch-default -Wswitch-enum -Wundef -Wunused-macros -Wunsafe-loop-optimizations -Wwrite-strings -finline-functions -s -Wno-inline -Wno-aggregate-return -Wno-missing-format-attribute -Wno-missing-noreturn -O  
                     AM C Flags:  
               Shared C Library: yes  
               Static C Library: yes

Fortran: yes  
               Fortran Compiler: /tmp/build/80754af9/hdf5\_1545243905949/\_build\_env/bin/x86\_64-conda\_cos6-linux-gnu-gfortran  
                  Fortran Flags:  
               H5 Fortran Flags:  -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Wno-c-binding-type  -s -O2  
               AM Fortran Flags:  
         Shared Fortran Library: yes  
         Static Fortran Library: yes

C++: yes  
                   C++ Compiler: /tmp/build/80754af9/hdf5\_1545243905949/\_build\_env/bin/x86\_64-conda\_cos6-linux-gnu-c++  
                      C++ Flags: -fvisibility-inlines-hidden -std=c++17 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -pipe -I/home/lsz/anaconda2/include -fdebug-prefix-map=$\{SRC\_DIR\}=/usr/local/src/conda/$\{PKG\_NAME\}-$\{PKG\_VERSION\} -fdebug-prefix-map=$\{PREFIX\}=/usr/local/src/conda-prefix  
                   H5 C++ Flags:   -pedantic -Wall -W -Wundef -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Wredundant-decls -Winline -Wsign-promo -Woverloaded-virtual -Wold-style-cast -Weffc++ -Wreorder -Wnon-virtual-dtor -Wctor-dtor-privacy -Wabi -finline-functions -s -O  
                   AM C++ Flags:  
             Shared C++ Library: yes  
             Static C++ Library: yes

Java: no

Features:  
\---------  
                   Parallel HDF5: no  
Parallel Filtered Dataset Writes: no  
              Large Parallel I/O: no  
              High-level library: yes  
                    Threadsafety: yes  
             Default API mapping: v110  
  With deprecated public symbols: yes  
          I/O filters (external): deflate(zlib)  
                             MPE: no  
                      Direct VFD: no  
                         dmalloc: no  
  Packages w/ extra debug output: none  
                     API tracing: no  
            Using memory checker: yes  
 Memory allocation sanity checks: no  
             Metadata trace file: no  
          Function stack tracing: no  
       Strict file format checks: no  
    Optimization instrumentation: no  
Bye...  
\*\*\* Aborted at 1563133170 (unix time) try "date -d @1563133170" if you are using GNU date \*\*\*  
PC: @     0x7f48f3f59428 gsignal  
\*\*\* SIGABRT (@0x7562) received by PID 30050 (TID 0x7f48cc8f5240) from PID 30050; stack trace: \*\*\*  
    @     0x7f48f9db9390 (unknown)  
    @     0x7f48f3f59428 gsignal  
    @     0x7f48f3f5b02a abort  
    @     0x7f48f9827f4c (unknown)  
    @     0x7f48fa82bd63 caffe::HDF5DataLayer<>::LoadHDF5FileData()  
    @     0x7f48fa826166 caffe::HDF5DataLayer<>::LayerSetUp()  
    @     0x7f48fa7556ff caffe::Net<>::Init()  
    @     0x7f48fa756cbe caffe::Net<>::Net()  
    @     0x7f48fa7b674a caffe::Solver<>::InitTrainNet()  
    @     0x7f48fa7b7d15 caffe::Solver<>::Init()  
    @     0x7f48fa7b802f caffe::Solver<>::Solver()  
    @           0xa6dcfe caffe::SGDSolver<>::SGDSolver()  
    @           0xa6ee1c caffe::RMSPropSolverTest<>::InitSolver()  
    @           0xa6ecf0 caffe::GradientBasedSolverTest<>::InitSolverFromProtoString()  
    @           0xa2e1a0 caffe::GradientBasedSolverTest<>::RunLeastSquaresSolver()  
    @           0xa5915f caffe::GradientBasedSolverTest<>::CheckAccumulation()  
    @           0xe66513 testing::internal::HandleExceptionsInMethodIfSupported<>()  
    @           0xe5f44a testing::Test::Run()  
    @           0xe5f598 testing::TestInfo::Run()  
    @           0xe5f6a5 testing::TestCase::Run()  
    @           0xe6123f testing::internal::UnitTestImpl::RunAllTests()  
    @           0xe61563 testing::UnitTest::Run()  
    @           0x8cdd4d main  
    @     0x7f48f3f44830 \_\_libc\_start\_main  
    @           0x8d5289 \_start  
    @                0x0 (unknown)  
Aborted (core dumped)  
src/caffe/test/CMakeFiles/runtest.dir/build.make:57: recipe for target 'src/caffe/test/CMakeFiles/runtest' failed  
make\[3\]: \*\*\* \[src/caffe/test/CMakeFiles/runtest\] Error 134  
CMakeFiles/Makefile2:360: recipe for target 'src/caffe/test/CMakeFiles/runtest.dir/all' failed  
make\[2\]: \*\*\* \[src/caffe/test/CMakeFiles/runtest.dir/all\] Error 2  
CMakeFiles/Makefile2:367: recipe for target 'src/caffe/test/CMakeFiles/runtest.dir/rule' failed  
make\[1\]: \*\*\* \[src/caffe/test/CMakeFiles/runtest.dir/rule\] Error 2  
Makefile:253: recipe for target 'runtest' failed  
make: \*\*\* \[runtest\] Error 2  
(base) lsz@RQ-Lab-DL-pc:~/Downloads/caffe-master-ori/build$ conda install -c anaconda hdf5=1.88.17  
WARNING: The conda.compat module is deprecated and will be removed in a future release.  
Collecting package metadata: / failed

CondaError: KeyboardInterrup

解决办法：（我用的conda，所以此法对我有用）

conda install -c anaconda hdf5=1.8.17